Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
280
ChIP-seq
247
ATAC-seq
178
DNase-seq
106
total RNA-seq
85
RNA microarray
71
single cell RNA-seq
28
snATAC-seq
27
WGBS
16
Hi-C
11
RRBS
5
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
Assay category
457
DNA accessibility
280
DNA binding
177
Transcription
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
163
June, 2019
130
August, 2021
93
February, 2021
79
February, 2023
72
August, 2017
66
May, 2022
66
October, 2019
47
September, 2023
44
October, 2018
43
December, 2017
30
July, 2019
26
May, 2019
26
November, 2018
23
May, 2020
21
November, 2019
20
April, 2019
19
April, 2020
15
May, 2023
12
November, 2017
11
October, 2017
10
March, 2020
8
January, 2021
7
December, 2018
6
September, 2017
5
March, 2019
5
May, 2024
4
July, 2018
4
November, 2020
2
January, 2018
2
May, 2021
1
August, 2022
1
December, 2019
1
January, 2019
Available data
1442
bam
1251
bigWig
tsv
453
bed narrowPeak
304
fastq
249
bigBed narrowPeak
193
bed bed3+
178
bed broadPeak
176
bigBed broadPeak
157
txt
64
xls
52
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1059
Homo sapiens
Biosample type
1062
tissue
cell line
357
primary cell
144
in vitro differentiated cells
4
stem cell
Organ
267
kidney
157
pancreas
138
liver
107
heart
100
bone element
66
limb
65
blood vessel
65
vasculature
58
brain
57
adipose tissue
57
connective tissue
50
musculature of body
49
artery
49
eye
19
lung
18
spleen
18
ureter
16
skeleton
14
nerve
epithelium
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
967
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
449
GRCh38
388
hg19
Lab
746
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
86
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
18
missing controlled_by
biosample_type!
cell line
files.file_type!
tsv
organ_slims!
epithelium
target.investigated_as!
histone
BIOSAMPLE
ASSAY
1062 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
RNA microarray
single cell RNA-seq
snATAC-seq
WGBS
Hi-C
RRBS
pCHi-C
FAIRE-seq
MeRIP-seq
tissue
kidney
7
75
13
49
59
6
1
1
1
islet of Langerhans
20
67
1
31
7
3
1
4
1
4
liver
81
20
2
20
1
3
1
1
bone element
84
coronary artery
3
36
2
+ See 83 more…
See all biosamples
Download