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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1012
total RNA-seq
269
ChIP-seq
240
ATAC-seq
180
single cell RNA-seq
169
DNase-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
21
WGBS
16
small RNA-seq
15
Hi-C
11
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
1208
Transcription
440
DNA accessibility
269
DNA binding
32
DNA methylation
15
3D chromatin structure
Target of assay
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
184
control
87
transcription factor
28
RNA binding protein
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
166
May, 2020
163
June, 2019
160
August, 2017
120
July, 2018
95
February, 2023
77
July, 2019
74
October, 2019
66
May, 2022
47
September, 2023
44
October, 2018
43
December, 2017
40
May, 2021
November, 2019
38
March, 2020
26
May, 2019
November, 2018
25
February, 2020
20
April, 2019
19
April, 2020
15
May, 2023
12
November, 2017
11
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
5
May, 2024
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1376
bam
1208
bigWig
1057
tsv
427
bed narrowPeak
277
fastq
232
bigBed narrowPeak
184
bed bed3+
169
bed broadPeak
167
bigBed broadPeak
157
txt
64
xls
52
tagAlign
19
bed bedMethyl
19
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
2080
Homo sapiens
Biosample type
2083
tissue
850
primary cell
cell line
277
in vitro differentiated cells
8
stem cell
Organ
512
connective tissue
454
adipose tissue
386
pancreas
284
liver
279
kidney
218
heart
158
bone element
79
blood vessel
79
brain
79
vasculature
73
limb
57
musculature of body
54
eye
53
artery
20
lung
19
nerve
18
ureter
16
skeleton
15
epithelium
10
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1988
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1304
GRCh38
1260
hg19
Lab
1766
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
18
missing controlled_by
biosample_type!
cell line
month_released!
November, 2018
November, 2019
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
2083 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
small RNA-seq
Hi-C
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
adipose tissue
382
1
3
1
3
islet of Langerhans
273
20
49
6
1
7
4
2
1
4
1
liver
167
76
20
1
1
3
1
1
1
kidney
49
7
75
64
13
6
1
1
1
bone element
84
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