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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1030
total RNA-seq
266
ChIP-seq
259
ATAC-seq
180
single cell RNA-seq
177
DNase-seq
87
RNA microarray
28
snATAC-seq
25
WGBS
24
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1226
Transcription
468
DNA accessibility
266
DNA binding
36
DNA methylation
16
3D chromatin structure
Target of assay
622
histone modification
histone
322
narrow histone mark
299
broad histone mark
179
control
88
transcription factor
28
RNA binding protein
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
166
May, 2020
163
June, 2019
161
August, 2017
120
July, 2018
95
February, 2023
77
July, 2019
74
October, 2019
66
May, 2022
47
September, 2023
44
October, 2018
43
December, 2017
40
May, 2021
40
November, 2019
37
March, 2020
26
May, 2019
24
February, 2020
20
April, 2019
19
April, 2020
17
November, 2018
15
May, 2023
12
November, 2017
10
October, 2017
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
5
May, 2024
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1424
bam
1241
bigWig
1074
tsv
457
bed narrowPeak
286
fastq
242
bigBed narrowPeak
192
bed bed3+
177
bed broadPeak
175
bigBed broadPeak
157
txt
64
xls
52
tagAlign
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
2127
Homo sapiens
Biosample type
2130
tissue
851
primary cell
cell line
282
in vitro differentiated cells
8
stem cell
Organ
514
connective tissue
456
adipose tissue
432
pancreas
292
liver
279
kidney
218
heart
158
bone element
81
brain
79
blood vessel
79
vasculature
73
limb
57
musculature of body
54
eye
53
artery
20
lung
19
nerve
spleen
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
spinal cord
1
stomach
1
urinary bladder
Project
2035
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1356
GRCh38
1310
hg19
Lab
1813
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
18
missing controlled_by
biosample_type!
cell line
organ_slims!
spinal cord
spleen
target.investigated_as!
histone
BIOSAMPLE
ASSAY
2130 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
20
68
6
1
7
4
3
1
1
4
adipose tissue
382
1
3
3
1
liver
167
81
20
1
2
3
1
1
1
1
kidney
49
7
75
64
13
6
1
1
1
bone element
84
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