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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
999
total RNA-seq
879
ChIP-seq
254
ATAC-seq
180
single cell RNA-seq
87
RNA microarray
27
snATAC-seq
25
pCHi-C
15
WGBS
12
Hi-C
5
RRBS
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
2
FAIRE-seq
Assay category
1179
Transcription
879
DNA binding
285
DNA accessibility
20
DNA methylation
12
3D chromatin structure
Target of assay
616
histone modification
615
histone
318
narrow histone mark
297
broad histone mark
184
control
81
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
258
August, 2017
238
October, 2019
229
August, 2021
193
May, 2020
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
July, 2019
74
October, 2018
65
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
24
February, 2020
23
October, 2017
19
April, 2020
17
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
5
March, 2019
4
November, 2020
4
September, 2017
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1843
bam
1709
bigWig
1028
tsv
977
bed narrowPeak
559
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
11
bed bedMethyl
11
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2485
Homo sapiens
Biosample type
2494
tissue
1024
primary cell
659
cell line
in vitro differentiated cells
7
stem cell
Organ
531
connective tissue
472
adipose tissue
472
pancreas
347
liver
266
heart
227
brain
227
kidney
158
bone element
121
blood vessel
121
vasculature
81
limb
68
artery
53
eye
42
musculature of body
41
nerve
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
spinal cord
1
stomach
1
urinary bladder
Project
2397
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1594
GRCh38
1506
hg19
Lab
2142
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
12
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
biosample_type!
in vitro differentiated cells
files.file_type!
bed bed3+
month_released!
July, 2019
organ_slims!
spinal cord
BIOSAMPLE
ASSAY
2494 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
292
50
68
6
7
4
3
4
1
1
adipose tissue
382
2
3
1
3
liver
165
142
20
1
1
3
1
1
kidney
49
27
75
64
6
1
bone element
84
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