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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
10
total RNA-seq
6
ATAC-seq
6
WGBS
2
DNase-seq
2
small RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
73
DNA binding
12
Transcription
8
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
February, 2021
57
August, 2017
23
October, 2018
10
July, 2019
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
54
bam
43
fastq
37
bigWig
13
bed narrowPeak
13
tsv
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
100
Homo sapiens
Biosample type
101
tissue
2
primary cell
in vitro differentiated cells
Organ
505
pancreas
360
liver
313
heart
277
kidney
265
brain
133
blood vessel
133
vasculature
116
limb
102
connective tissue
101
adipose tissue
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
15
epithelium
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
101
AMP
Genome assembly (visualization)
37
hg19
35
GRCh38
Lab
101
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
biosample_type!
in vitro differentiated cells
month_released!
February, 2021
May, 2023
BIOSAMPLE
ASSAY
101 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
small RNA-seq
RNA microarray
pCHi-C
tissue
subcutaneous abdominal adipose tissue
36
3
omental fat pad
11
5
1
2
1
subcutaneous adipose tissue
12
5
1
1
1
white adipose tissue
12
adipose tissue
2
3
3
1
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