Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
651
ChIP-seq
537
total RNA-seq
227
ATAC-seq
174
single cell RNA-seq
167
DNase-seq
86
RNA microarray
28
snATAC-seq
23
pCHi-C
16
Hi-C
14
WGBS
14
small RNA-seq
8
RRBS
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
Assay category
725
Transcription
651
DNA binding
424
DNA accessibility
22
DNA methylation
16
3D chromatin structure
Target of assay
523
histone
523
histone modification
285
narrow histone mark
238
broad histone mark
115
control
15
transcription factor
13
RNA binding protein
2
nucleotide modification
Date released
241
October, 2019
228
August, 2021
193
May, 2020
162
June, 2019
159
February, 2021
118
July, 2018
115
May, 2019
94
February, 2023
82
November, 2017
80
April, 2019
70
August, 2017
67
July, 2019
47
September, 2023
42
May, 2022
40
May, 2021
40
May, 2024
39
November, 2019
38
March, 2020
23
February, 2020
19
April, 2020
16
October, 2018
14
May, 2023
8
January, 2021
6
October, 2017
4
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1443
bam
1333
bigWig
957
bed narrowPeak
676
tsv
538
bigBed narrowPeak
fastq
230
tagAlign
209
bed broadPeak
198
bed bed3+
173
bigBed broadPeak
157
txt
64
xls
21
bed bedMethyl
21
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1953
Homo sapiens
Biosample type
1954
tissue
primary cell
253
in vitro differentiated cells
235
cell line
6
stem cell
Organ
504
connective tissue
adipose tissue
313
heart
299
kidney
292
pancreas
278
liver
253
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
80
musculature of body
73
artery
56
eye
43
nerve
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
spleen
1
stomach
1
urinary bladder
Project
1857
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1180
GRCh38
1058
hg19
Lab
1628
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
90
inconsistent ontology term
9
audit script error
biosample_type!
primary cell
files.file_type!
fastq
organ_slims!
adipose tissue
spleen
BIOSAMPLE
ASSAY
1954 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
WGBS
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
FAIRE-seq
tissue
islet of Langerhans
43
195
48
7
4
3
1
4
liver
78
167
20
1
1
1
2
1
kidney
27
49
75
64
13
6
1
1
1
bone element
84
heart left ventricle
35
3
2
18
3
1
1
4
1
+ See 168 more…
See all biosamples
Download