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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
907
ChIP-seq
259
ATAC-seq
106
total RNA-seq
85
RNA microarray
71
single cell RNA-seq
28
snATAC-seq
27
WGBS
16
Hi-C
15
DNase-seq
11
RRBS
5
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
Assay category
907
DNA binding
306
DNA accessibility
177
Transcription
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
234
October, 2019
195
August, 2017
June, 2019
130
August, 2021
115
May, 2019
93
February, 2021
91
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
66
May, 2022
50
May, 2020
48
December, 2017
47
September, 2023
40
May, 2024
30
July, 2019
26
November, 2018
23
October, 2017
21
November, 2019
19
April, 2020
15
May, 2023
12
March, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
July, 2018
4
November, 2020
2
January, 2018
2
May, 2021
1
August, 2022
1
December, 2019
Available data
1744
bam
1609
bigWig
tsv
821
bed narrowPeak
398
bigBed narrowPeak
377
fastq
238
tagAlign
157
txt
64
xls
50
bed broadPeak
42
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
13
bigBed broadPeak
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1529
Homo sapiens
Biosample type
1538
tissue
primary cell
543
cell line
263
in vitro differentiated cells
6
stem cell
Organ
226
pancreas
219
kidney
217
brain
207
liver
175
heart
116
blood vessel
116
vasculature
100
bone element
89
connective tissue
88
adipose tissue
83
limb
67
artery
48
eye
43
musculature of body
38
nerve
24
spleen
19
lung
16
skeleton
12
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
1441
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
779
GRCh38
690
hg19
Lab
1187
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
biosample_type!
primary cell
files.file_type!
tsv
month_released!
June, 2019
BIOSAMPLE
ASSAY
1538 results
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ChIP-seq
ATAC-seq
total RNA-seq
RNA microarray
single cell RNA-seq
snATAC-seq
WGBS
Hi-C
DNase-seq
RRBS
pCHi-C
FAIRE-seq
MeRIP-seq
tissue
kidney
27
75
49
59
6
1
1
1
liver
145
20
20
1
3
1
2
1
islet of Langerhans
71
67
31
7
3
1
1
4
1
4
bone element
84
body of pancreas
35
4
2
2
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