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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
901
total RNA-seq
784
ChIP-seq
211
ATAC-seq
177
DNase-seq
17
WGBS
16
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
Assay category
923
Transcription
784
DNA binding
392
DNA accessibility
17
DNA methylation
Target of assay
523
histone modification
522
histone
268
narrow histone mark
254
broad histone mark
167
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
193
May, 2020
190
August, 2017
186
October, 2019
163
June, 2019
116
July, 2018
115
May, 2019
80
April, 2019
74
October, 2018
70
November, 2017
64
August, 2021
64
July, 2019
63
February, 2023
48
December, 2017
44
May, 2022
40
May, 2024
39
November, 2019
38
May, 2021
26
November, 2018
15
October, 2017
9
March, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
1
March, 2019
Available data
1907
bam
1772
bigWig
1076
tsv
984
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2109
Homo sapiens
Biosample type
2116
tissue
primary cell
596
cell line
256
in vitro differentiated cells
3
stem cell
Organ
500
connective tissue
442
adipose tissue
435
pancreas
308
liver
227
brain
208
heart
162
kidney
122
blood vessel
122
vasculature
114
limb
69
artery
66
bone element
57
musculature of body
42
nerve
30
eye
24
spleen
18
ureter
12
epithelium
8
skeleton
1
pituitary gland
Project
2114
AMP
2
T1D
Genome assembly (visualization)
1842
GRCh38
1718
hg19
Lab
1967
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
24
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
biosample_type!
primary cell
month_released!
February, 2018
BIOSAMPLE
ASSAY
2116 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
single cell RNA-seq
FAIRE-seq
tissue
adipose tissue
381
2
1
2
islet of Langerhans
266
36
38
1
6
1
liver
147
122
20
2
1
kidney
27
64
13
1
bone tissue
58
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