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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
604
ChIP-seq
586
total RNA-seq
251
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
28
snATAC-seq
27
WGBS
25
pCHi-C
16
small RNA-seq
14
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
Assay category
776
Transcription
604
DNA binding
461
DNA accessibility
38
DNA methylation
14
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
February, 2021
227
August, 2021
211
August, 2017
203
October, 2019
193
May, 2020
163
June, 2019
120
July, 2018
95
February, 2023
77
July, 2019
66
May, 2022
59
May, 2019
55
October, 2018
47
September, 2023
45
December, 2017
43
April, 2019
40
March, 2020
40
May, 2021
40
November, 2017
40
November, 2019
26
November, 2018
25
February, 2020
20
May, 2024
19
April, 2020
15
May, 2023
13
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
4
November, 2020
3
December, 2019
3
January, 2019
3
March, 2019
2
January, 2018
1
August, 2022
Available data
1233
bam
1075
bigWig
723
bed narrowPeak
623
tsv
357
bigBed narrowPeak
332
fastq
199
bed bed3+
193
bed broadPeak
176
bigBed broadPeak
162
tagAlign
68
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
5
bed bed3
1
tagAlign bed3+
Organism
1920
Homo sapiens
Biosample type
1925
tissue
primary cell
514
cell line
312
in vitro differentiated cells
9
stem cell
Organ
460
pancreas
335
liver
281
kidney
256
heart
195
brain
97
blood vessel
97
vasculature
83
connective tissue
82
adipose tissue
82
limb
66
musculature of body
59
artery
56
eye
27
nerve
21
spleen
20
lung
18
ureter
15
epithelium
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1828
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1164
GRCh38
1103
hg19
Lab
1597
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
20
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
7
inconsistent ontology term
4
audit script error
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
biosample_type!
primary cell
lab.title!
Bing Ren, UCSD
month_released!
February, 2021
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
1925 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
tissue
islet of Langerhans
57
291
67
1
6
7
4
1
1
1
4
liver
123
167
20
2
3
1
1
1
1
kidney
17
49
75
13
59
6
1
1
1
heart left ventricle
20
3
2
3
18
4
1
1
1
coronary artery
5
1
36
2
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