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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
68
DNase-seq
64
single cell RNA-seq
50
total RNA-seq
23
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
150
DNA accessibility
115
Transcription
23
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
18
histone
18
histone modification
10
broad histone mark
8
narrow histone mark
4
control
1
RNA binding protein
1
transcription factor
Date released
128
August, 2021
68
June, 2019
47
September, 2023
23
April, 2019
14
May, 2023
8
February, 2021
4
July, 2019
October, 2019
3
December, 2019
Available data
151
bed narrowPeak
94
bam
89
bigWig
87
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
62
txt
12
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
295
Homo sapiens
Biosample type
295
tissue
25
primary cell
4
cell line
Organ
545
connective tissue
501
pancreas
487
adipose tissue
355
liver
305
heart
295
kidney
179
brain
158
bone element
107
blood vessel
107
vasculature
82
musculature of body
53
limb
47
artery
35
eye
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
248
AMP
47
KPMP
Genome assembly (visualization)
163
GRCh38
90
hg19
Lab
142
Katalin Susztak, Upenn
106
AMP-T2D consortium
47
KPMP
Audit category:
7
audit script error
biosample_type!
stem cell
files.file_type!
bedpe
month_released!
October, 2019
BIOSAMPLE
ASSAY
295 results
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ATAC-seq
DNase-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
RNA microarray
FAIRE-seq
Hi-C
RRBS
small RNA-seq
tissue
kidney
75
13
64
49
23
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
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