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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
784
ChIP-seq
220
ATAC-seq
151
DNase-seq
106
total RNA-seq
85
RNA microarray
70
single cell RNA-seq
28
snATAC-seq
19
WGBS
13
Hi-C
10
RRBS
5
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
Assay category
784
DNA binding
403
DNA accessibility
176
Transcription
29
DNA methylation
13
3D chromatin structure
Target of assay
533
histone modification
532
histone
286
narrow histone mark
246
broad histone mark
171
control
82
transcription factor
18
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
228
October, 2019
195
August, 2017
136
June, 2019
130
August, 2021
94
May, 2019
93
February, 2021
82
November, 2017
74
October, 2018
66
May, 2022
55
February, 2023
50
May, 2020
48
December, 2017
47
September, 2023
26
November, 2018
23
April, 2019
23
October, 2017
21
November, 2019
19
April, 2020
17
July, 2019
15
May, 2023
10
March, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
July, 2018
4
November, 2020
2
January, 2018
2
May, 2021
1
August, 2022
1
December, 2019
Available data
1775
bam
1615
bigWig
tsv
811
bed narrowPeak
473
bigBed narrowPeak
377
fastq
238
tagAlign
186
bed broadPeak
178
bed bed3+
157
txt
149
bigBed broadPeak
64
xls
18
bed bedMethyl
18
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1490
Homo sapiens
Biosample type
1499
tissue
809
primary cell
529
cell line
263
in vitro differentiated cells
stem cell
Organ
287
kidney
242
brain
230
pancreas
207
liver
heart
119
blood vessel
119
vasculature
115
limb
100
bone element
90
connective tissue
89
adipose tissue
75
musculature of body
69
artery
51
eye
38
nerve
24
spleen
19
lung
18
ureter
16
skeleton
12
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
1402
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
764
GRCh38
737
hg19
Lab
1188
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
biosample_type!
stem cell
files.file_type!
tsv
organ_slims!
heart
organ_slims!!
heart
BIOSAMPLE
ASSAY
1499 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
RNA microarray
single cell RNA-seq
snATAC-seq
WGBS
Hi-C
RRBS
pCHi-C
FAIRE-seq
MeRIP-seq
tissue
kidney
27
75
13
49
59
6
1
1
1
liver
145
20
2
20
1
3
1
1
islet of Langerhans
71
67
1
31
7
3
1
4
1
4
bone element
84
body of pancreas
35
4
4
2
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