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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
867
ChIP-seq
505
total RNA-seq
178
DNase-seq
123
ATAC-seq
107
single cell RNA-seq
27
WGBS
24
pCHi-C
16
small RNA-seq
13
Hi-C
11
RRBS
4
FAIRE-seq
3
RNA microarray
2
snATAC-seq
Assay category
867
DNA binding
628
Transcription
307
DNA accessibility
38
DNA methylation
13
3D chromatin structure
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
185
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
February, 2021
284
August, 2017
242
October, 2019
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
99
August, 2021
82
November, 2017
80
April, 2019
77
February, 2023
77
July, 2019
74
October, 2018
48
December, 2017
40
March, 2020
40
November, 2019
38
May, 2021
26
November, 2018
25
February, 2020
22
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
3
December, 2019
2
January, 2018
2
May, 2022
1
August, 2022
1
May, 2023
Available data
1430
bam
1267
bigWig
834
bed narrowPeak
623
tsv
561
bigBed narrowPeak
351
fastq
238
tagAlign
211
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
25
bed bedMethyl
25
bigBed bedMethyl
9
bedpe bed3+
9
hic
5
bed bed3
5
txt
1
tagAlign bed3+
Organism
1872
Homo sapiens
Biosample type
1880
tissue
521
primary cell
519
cell line
314
in vitro differentiated cells
stem cell
Organ
442
pancreas
320
liver
273
heart
265
brain
133
blood vessel
133
vasculature
116
limb
103
connective tissue
102
adipose tissue
102
kidney
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
18
ureter
15
epithelium
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
1876
AMP
4
T1D
Genome assembly (visualization)
1289
GRCh38
1260
hg19
Lab
1880
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
7
inconsistent ontology term
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
biosample_type!
stem cell
files.file_type!
zippedFastqFolder
month_released!
February, 2021
BIOSAMPLE
ASSAY
1880 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
RNA microarray
snATAC-seq
tissue
islet of Langerhans
71
280
1
34
6
4
1
1
1
1
liver
145
147
2
3
1
1
1
1
heart left ventricle
35
3
3
2
18
4
1
1
1
body of pancreas
35
3
4
4
2
2
coronary artery
5
1
2
36
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