Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
901
total RNA-seq
723
ChIP-seq
177
DNase-seq
65
ATAC-seq
19
WGBS
16
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
3
RRBS
Assay category
923
Transcription
723
DNA binding
246
DNA accessibility
22
DNA methylation
Target of assay
467
histone modification
466
histone
243
narrow histone mark
223
broad histone mark
167
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
193
May, 2020
186
October, 2019
175
August, 2017
163
June, 2019
116
July, 2018
115
May, 2019
79
April, 2019
74
October, 2018
69
November, 2017
64
July, 2019
48
December, 2017
39
November, 2019
38
May, 2021
26
November, 2018
24
May, 2022
17
October, 2017
9
March, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
1
March, 2019
Available data
1907
bam
1772
bigWig
1076
tsv
984
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1907
Homo sapiens
Biosample type
1914
tissue
781
primary cell
584
cell line
296
in vitro differentiated cells
stem cell
Organ
499
connective tissue
441
adipose tissue
430
pancreas
290
liver
227
brain
132
heart
114
limb
98
kidney
87
blood vessel
87
vasculature
66
bone element
46
musculature of body
42
nerve
34
artery
24
spleen
18
ureter
8
skeleton
3
eye
1
pituitary gland
Project
1912
AMP
2
T1D
Genome assembly (visualization)
1704
GRCh38
1652
hg19
Lab
1888
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
biosample_type!
stem cell
BIOSAMPLE
ASSAY
1914 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
FAIRE-seq
RRBS
tissue
adipose tissue
381
2
3
islet of Langerhans
266
30
1
39
6
1
liver
147
122
2
1
1
1
bone tissue
58
body of pancreas
2
35
4
4
2
2
+ See 140 more…
See all biosamples
Download