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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
176
DNase-seq
28
ChIP-seq
10
Hi-C
1
snATAC-seq
Assay category
177
DNA accessibility
28
DNA binding
10
3D chromatin structure
Target of assay
13
transcription factor
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
3
control
2
RNA binding protein
Date released
163
June, 2019
26
August, 2017
9
November, 2018
7
March, 2020
5
October, 2019
2
September, 2017
1
August, 2021
1
May, 2022
1
November, 2019
Available data
1907
bam
1772
bigWig
1076
tsv
984
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
215
Homo sapiens
Biosample type
215
tissue
41
primary cell
32
in vitro differentiated cells
5
cell line
stem cell
Organ
68
kidney
36
limb
35
musculature of body
30
heart
30
pancreas
27
brain
18
ureter
7
liver
6
adipose tissue
6
blood vessel
6
connective tissue
6
vasculature
4
artery
3
eye
2
nerve
1
spleen
Project
215
AMP
Genome assembly (visualization)
204
GRCh38
198
hg19
Lab
214
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
14
missing controlled_by
biosample_type!
stem cell
BIOSAMPLE
ASSAY
215 results
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Clear Filters
DNase-seq
ChIP-seq
Hi-C
snATAC-seq
tissue
islet of Langerhans
21
2
heart
18
1
muscle of arm
17
brain
14
kidney
13
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