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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
450
ChIP-seq
206
ATAC-seq
173
DNase-seq
4
FAIRE-seq
Assay category
450
DNA binding
383
DNA accessibility
Target of assay
375
histone modification
374
histone
214
broad histone mark
160
narrow histone mark
75
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
163
June, 2019
October, 2019
93
May, 2019
66
August, 2017
65
April, 2019
64
August, 2021
63
February, 2023
58
November, 2017
45
October, 2018
40
May, 2024
38
May, 2022
36
December, 2017
27
May, 2020
20
November, 2019
17
November, 2018
12
October, 2017
8
February, 2021
7
July, 2019
6
January, 2019
3
December, 2018
2
March, 2020
Available data
1721
bam
1612
bigWig
1068
tsv
833
bed narrowPeak
514
bigBed narrowPeak
377
fastq
209
bed broadPeak
201
bed bed3+
189
tagAlign
172
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
827
Homo sapiens
Biosample type
833
tissue
386
cell line
274
primary cell
130
in vitro differentiated cells
stem cell
Organ
168
heart
151
kidney
123
pancreas
117
brain
108
liver
79
blood vessel
79
vasculature
51
musculature of body
44
limb
41
artery
30
eye
18
ureter
14
spleen
13
adipose tissue
13
connective tissue
12
epithelium
8
bone element
8
skeleton
Project
831
AMP
2
T1D
Genome assembly (visualization)
732
GRCh38
626
hg19
Lab
691
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
biosample_type!
stem cell
files.file_type!
tar
month_released!
October, 2019
BIOSAMPLE
ASSAY
833 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver
77
20
2
kidney
18
64
13
1
islet of Langerhans
20
37
1
1
coronary artery
3
36
2
left cardiac atrium
40
1
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