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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
592
ChIP-seq
208
ATAC-seq
159
DNase-seq
4
FAIRE-seq
Assay category
592
DNA binding
371
DNA accessibility
Target of assay
520
histone modification
519
histone
266
narrow histone mark
253
broad histone mark
75
transcription factor
26
RNA binding protein
other context
3
other post-translational modification
2
chromatin remodeller
Date released
151
October, 2019
145
June, 2019
93
May, 2019
66
August, 2017
65
April, 2019
64
August, 2021
63
February, 2023
58
November, 2017
45
October, 2018
40
May, 2024
38
May, 2022
36
December, 2017
27
May, 2020
20
November, 2019
14
November, 2018
12
October, 2017
8
February, 2021
7
July, 2019
6
January, 2019
3
December, 2018
2
March, 2020
Available data
1886
bam
1751
bigWig
1076
tsv
963
bed narrowPeak
540
bigBed narrowPeak
374
fastq
238
tagAlign
195
bed broadPeak
187
bed bed3+
158
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
957
Homo sapiens
Biosample type
963
tissue
402
cell line
295
primary cell
132
in vitro differentiated cells
stem cell
Organ
192
brain
173
heart
153
kidney
123
pancreas
113
liver
100
blood vessel
100
vasculature
92
limb
62
artery
51
musculature of body
30
eye
27
nerve
ureter
13
adipose tissue
13
connective tissue
12
epithelium
11
spleen
8
bone element
8
skeleton
1
pituitary gland
Project
961
AMP
2
T1D
Genome assembly (visualization)
862
GRCh38
756
hg19
Lab
821
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
biosample_type!
stem cell
organ_slims!
ureter
target.investigated_as!
other context
BIOSAMPLE
ASSAY
963 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver
82
20
2
kidney
20
64
13
1
islet of Langerhans
20
37
1
1
coronary artery
3
36
2
left cardiac atrium
40
1
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