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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
182
ChIP-seq
97
total RNA-seq
29
ATAC-seq
6
single cell RNA-seq
4
WGBS
3
RRBS
1
DNase-seq
1
FAIRE-seq
Assay category
182
DNA binding
103
Transcription
31
DNA accessibility
7
DNA methylation
Target of assay
62
histone modification
61
control
61
histone
59
transcription factor
39
broad histone mark
22
narrow histone mark
13
RNA binding protein
2
chromatin remodeller
Date released
149
August, 2017
58
October, 2018
48
December, 2017
24
May, 2022
November, 2018
17
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
4
September, 2017
2
July, 2018
1
March, 2019
Available data
1881
bam
1749
bigWig
1076
tsv
967
bed narrowPeak
544
bigBed narrowPeak
351
fastq
238
tagAlign
204
bed broadPeak
bed bed3+
167
bigBed broadPeak
157
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
316
Homo sapiens
Biosample type
408
primary cell
366
cell line
323
tissue
122
in vitro differentiated cells
stem cell
Organ
185
pancreas
73
liver
38
adipose tissue
38
connective tissue
15
spleen
10
brain
2
musculature of body
Project
323
AMP
Genome assembly (visualization)
249
hg19
230
GRCh38
Lab
297
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
biosample_type!
stem cell
files.file_type!
bed bed3+
month_released!
November, 2018
BIOSAMPLE
ASSAY
323 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
RRBS
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
7
97
20
6
1
1
liver
60
1
1
body of pancreas
33
4
pancreas
16
spleen
14
1
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