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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
ATAC-seq
100
ChIP-seq
73
DNase-seq
70
single cell RNA-seq
57
total RNA-seq
6
snATAC-seq
3
snDrop-seq
2
Hi-C
2
RNA microarray
2
WGBS
1
FAIRE-seq
1
RRBS
1
pCHi-C
1
small RNA-seq
Assay category
193
DNA accessibility
128
Transcription
100
DNA binding
3
DNA methylation
2
3D chromatin structure
Target of assay
74
histone
74
histone modification
46
broad histone mark
28
narrow histone mark
22
control
4
RNA binding protein
4
transcription factor
Date released
134
August, 2021
71
June, 2019
50
May, 2019
47
September, 2023
35
February, 2023
30
October, 2019
23
April, 2019
14
May, 2023
11
July, 2019
8
February, 2021
3
December, 2019
3
February, 2020
3
March, 2020
Available data
253
bed narrowPeak
185
bam
161
bigWig
149
bigBed narrowPeak
73
bed bed3+
73
bed broadPeak
73
bigBed broadPeak
64
xls
62
txt
26
tsv
5
csv
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bedpe bed3+
Organism
432
Homo sapiens
Biosample type
432
tissue
85
cell line
66
primary cell
Organ
490
connective tissue
431
adipose tissue
358
pancreas
313
heart
307
liver
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
73
artery
56
eye
56
musculature of body
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
385
AMP
47
KPMP
Genome assembly (visualization)
270
GRCh38
162
hg19
Lab
243
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
Audit category:
7
audit script error
biosample_type!
stem cell
month_released!
August, 2017
BIOSAMPLE
ASSAY
432 results
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ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
snDrop-seq
Hi-C
RNA microarray
WGBS
FAIRE-seq
RRBS
pCHi-C
small RNA-seq
tissue
kidney
75
27
13
64
49
6
1
1
1
coronary artery
36
5
2
1
tibial artery
1
23
2
1
aorta
13
4
1
1
2
1
ascending aorta
16
1
2
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