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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ChIP-seq
135
DNase-seq
22
total RNA-seq
16
ATAC-seq
4
pCHi-C
1
Hi-C
Assay category
195
DNA binding
151
DNA accessibility
22
Transcription
1
3D chromatin structure
Target of assay
168
histone
168
histone modification
129
narrow histone mark
39
broad histone mark
27
control
Date released
545
February, 2021
258
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
131
June, 2019
120
July, 2018
108
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
70
July, 2019
64
May, 2022
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
35
March, 2020
26
November, 2018
23
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
317
bam
291
bigWig
282
bed narrowPeak
178
bigBed narrowPeak
135
bed bed3+
135
bed broadPeak
135
bigBed broadPeak
49
tagAlign
8
tsv
1
bedpe bed3+
1
hic
1
tagAlign bed3+
Organism
373
Homo sapiens
Biosample type
373
tissue
78
primary cell
30
cell line
8
in vitro differentiated cells
Organ
111
brain
101
limb
72
kidney
42
nerve
35
heart
musculature of body
29
blood vessel
29
vasculature
28
artery
24
eye
18
ureter
7
pancreas
6
liver
4
gonad
4
ovary
3
connective tissue
2
adipose tissue
2
pituitary gland
1
lymph node
1
skin of body
Project
373
AMP
Genome assembly (visualization)
292
GRCh38
278
hg19
Lab
373
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
biosample_type!
stem cell
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
373 results
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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
pCHi-C
Hi-C
tissue
islet of Langerhans
21
14
13
4
tibial nerve
35
2
4
1
heart
5
18
2
1
tibial artery
23
2
1
brain
5
12
1
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