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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
160
ATAC-seq
144
ChIP-seq
127
total RNA-seq
87
RNA microarray
81
single cell RNA-seq
28
snATAC-seq
22
pCHi-C
13
Hi-C
10
RRBS
8
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
208
Transcription
189
DNA accessibility
144
DNA binding
18
DNA methylation
13
3D chromatin structure
Target of assay
126
histone
126
histone modification
65
narrow histone mark
61
broad histone mark
20
control
2
nucleotide modification
Date released
137
August, 2021
114
August, 2017
93
February, 2021
59
February, 2023
54
October, 2019
47
September, 2023
42
May, 2022
26
March, 2020
22
February, 2020
19
April, 2020
15
May, 2023
13
November, 2017
10
July, 2019
8
January, 2021
8
October, 2017
4
July, 2018
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
2
May, 2021
1
August, 2022
1
November, 2019
Available data
bam
1615
bigWig
965
tsv
811
bed narrowPeak
bigBed narrowPeak
377
fastq
238
tagAlign
186
bed broadPeak
178
bed bed3+
157
txt
149
bigBed broadPeak
64
xls
18
bed bedMethyl
18
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
686
Homo sapiens
Biosample type
688
tissue
477
primary cell
101
in vitro differentiated cells
78
cell line
5
stem cell
Organ
201
kidney
heart
92
bone element
76
pancreas
73
liver
53
eye
48
connective tissue
47
adipose tissue
46
blood vessel
46
vasculature
39
artery
39
brain
38
musculature of body
20
lung
15
epithelium
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
593
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
101
hg19
81
GRCh38
Lab
401
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
files.file_type!
bam
bigBed narrowPeak
month_released!
March, 2023
organ_slims!
heart
BIOSAMPLE
ASSAY
688 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
RNA microarray
single cell RNA-seq
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
75
49
64
6
1
1
islet of Langerhans
30
41
26
7
4
3
1
4
bone element
84
liver
20
23
20
1
1
1
1
3
subcutaneous abdominal adipose tissue
36
3
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