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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
ChIP-seq
126
single cell RNA-seq
117
total RNA-seq
116
ATAC-seq
87
RNA microarray
26
snATAC-seq
25
pCHi-C
16
Hi-C
8
RRBS
8
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
243
Transcription
184
DNA binding
143
DNA accessibility
16
3D chromatin structure
16
DNA methylation
Target of assay
161
histone
161
histone modification
81
narrow histone mark
80
broad histone mark
20
control
5
RNA binding protein
5
transcription factor
2
nucleotide modification
Date released
229
August, 2021
109
August, 2017
February, 2023
93
February, 2021
56
October, 2019
42
May, 2022
40
May, 2024
31
March, 2020
25
February, 2020
19
April, 2020
15
May, 2023
13
July, 2019
13
November, 2017
8
January, 2021
6
October, 2017
4
July, 2018
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
2
May, 2021
1
April, 2019
1
August, 2022
1
November, 2019
Available data
bam
1772
bigWig
1072
tsv
921
bed narrowPeak
561
bigBed narrowPeak
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
153
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
719
Homo sapiens
Biosample type
721
tissue
295
primary cell
82
in vitro differentiated cells
72
cell line
6
stem cell
Organ
154
kidney
145
heart
84
bone element
71
liver
57
pancreas
47
connective tissue
46
adipose tissue
37
brain
36
musculature of body
22
eye
20
lung
11
blood vessel
11
vasculature
8
limb
5
gonad
5
ovary
4
artery
2
intestine
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
large intestine
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
691
AMP
19
LungMap
11
T1D
Genome assembly (visualization)
120
GRCh38
70
hg19
Lab
460
AMP-T2D consortium
142
Katalin Susztak, Upenn
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
10
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
9
audit script error
files.file_type!
bam
fastq
lab.title!
KPMP
month_released!
February, 2023
BIOSAMPLE
ASSAY
721 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
17
49
75
6
1
1
islet of Langerhans
41
21
18
5
4
3
1
4
bone element
84
liver
23
1
20
20
1
1
2
left cardiac atrium
40
18
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