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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
ATAC-seq
185
ChIP-seq
152
single cell RNA-seq
77
total RNA-seq
25
pCHi-C
17
snATAC-seq
11
RRBS
10
WGBS
5
Hi-C
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
1
DNase-seq
Assay category
229
Transcription
214
DNA accessibility
185
DNA binding
21
DNA methylation
5
3D chromatin structure
Target of assay
162
histone
162
histone modification
81
broad histone mark
81
narrow histone mark
20
control
5
RNA binding protein
5
transcription factor
2
nucleotide modification
Date released
171
August, 2021
114
August, 2017
91
February, 2023
55
October, 2019
47
September, 2023
41
May, 2022
40
May, 2024
25
February, 2020
24
March, 2020
April, 2020
15
May, 2023
13
July, 2019
13
November, 2017
8
January, 2021
8
October, 2017
4
February, 2021
4
July, 2018
4
November, 2020
3
December, 2019
3
March, 2019
2
January, 2018
2
May, 2021
1
April, 2019
1
August, 2022
Available data
bam
1772
bigWig
1076
tsv
984
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
688
Homo sapiens
Biosample type
689
tissue
473
primary cell
96
in vitro differentiated cells
77
cell line
7
stem cell
Organ
178
heart
138
kidney
73
pancreas
72
liver
53
eye
49
connective tissue
48
adipose tissue
45
blood vessel
45
vasculature
39
artery
39
brain
35
musculature of body
15
epithelium
8
limb
5
gonad
5
ovary
4
bone element
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
613
AMP
47
KPMP
29
T1D
Genome assembly (visualization)
156
GRCh38
95
hg19
Lab
440
AMP-T2D consortium
84
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
audit script error
3
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bam
hic
txt
month_released!
April, 2020
BIOSAMPLE
ASSAY
689 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
pCHi-C
snATAC-seq
RRBS
WGBS
Hi-C
MeRIP-seq
RNA microarray
snDrop-seq
DNase-seq
tissue
kidney
75
51
6
1
islet of Langerhans
30
41
26
4
7
1
1
4
liver
20
23
1
20
1
1
3
left cardiac atrium
40
18
subcutaneous abdominal adipose tissue
36
3
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