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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
194
ATAC-seq
185
ChIP-seq
100
total RNA-seq
85
RNA microarray
71
single cell RNA-seq
28
snATAC-seq
16
Hi-C
11
RRBS
10
WGBS
5
pCHi-C
4
MeRIP-seq
1
DNase-seq
Assay category
223
DNA accessibility
185
DNA binding
171
Transcription
21
DNA methylation
16
3D chromatin structure
Target of assay
162
histone
162
histone modification
81
broad histone mark
81
narrow histone mark
20
control
5
RNA binding protein
5
transcription factor
2
nucleotide modification
Date released
130
August, 2021
114
August, 2017
91
February, 2023
85
February, 2021
56
October, 2019
47
September, 2023
42
May, 2022
40
May, 2024
19
April, 2020
15
May, 2023
13
July, 2019
13
November, 2017
10
March, 2020
8
January, 2021
8
October, 2017
4
July, 2018
4
November, 2020
3
March, 2019
2
January, 2018
2
May, 2021
1
April, 2019
1
August, 2022
1
December, 2019
1
November, 2019
Available data
bam
1772
bigWig
tsv
984
bed narrowPeak
561
bigBed narrowPeak
376
fastq
238
tagAlign
212
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
708
Homo sapiens
Biosample type
710
tissue
460
primary cell
99
in vitro differentiated cells
65
cell line
3
stem cell
Organ
191
kidney
92
bone element
83
heart
71
liver
71
pancreas
48
eye
46
connective tissue
45
adipose tissue
36
blood vessel
36
vasculature
35
artery
35
musculature of body
25
brain
19
lung
12
epithelium
8
skeleton
5
limb
4
gonad
4
ovary
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
615
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
155
GRCh38
105
hg19
Lab
385
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
84
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
files.file_type!
bam
tsv
lab.title!
Mark McCarthy, Oxford
month_released!
September, 2018
BIOSAMPLE
ASSAY
710 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
RNA microarray
single cell RNA-seq
snATAC-seq
Hi-C
RRBS
WGBS
pCHi-C
MeRIP-seq
DNase-seq
tissue
kidney
75
49
59
6
1
1
islet of Langerhans
28
41
25
7
3
1
4
4
bone element
84
liver
20
23
20
1
1
1
3
left cardiac atrium
40
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