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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
185
ChIP-seq
163
single cell RNA-seq
121
ATAC-seq
87
RNA microarray
80
total RNA-seq
25
pCHi-C
22
snATAC-seq
15
Hi-C
11
RRBS
10
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
243
Transcription
185
DNA binding
144
DNA accessibility
21
DNA methylation
15
3D chromatin structure
Target of assay
162
histone
162
histone modification
81
broad histone mark
81
narrow histone mark
20
control
5
RNA binding protein
5
transcription factor
2
nucleotide modification
Date released
114
August, 2017
101
August, 2021
95
February, 2023
93
February, 2021
56
October, 2019
47
September, 2023
42
May, 2022
40
May, 2024
31
March, 2020
25
February, 2020
19
April, 2020
13
July, 2019
13
November, 2017
8
January, 2021
8
October, 2017
4
July, 2018
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
2
May, 2021
1
April, 2019
1
August, 2022
May, 2023
1
November, 2019
Available data
bam
1609
bigWig
1076
tsv
757
bed narrowPeak
398
bigBed narrowPeak
377
fastq
238
tagAlign
100
txt
50
bed broadPeak
42
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
13
bigBed broadPeak
10
bedpe bed3+
10
hic
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
725
Homo sapiens
Biosample type
727
tissue
479
primary cell
103
in vitro differentiated cells
80
cell line
7
stem cell
Organ
181
heart
92
bone element
76
pancreas
73
liver
59
kidney
53
eye
48
connective tissue
47
adipose tissue
46
blood vessel
46
vasculature
39
artery
39
brain
38
musculature of body
20
lung
15
epithelium
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
632
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
105
hg19
80
GRCh38
Lab
542
AMP-T2D consortium
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
files.file_type!
bam
lab.title!
Katalin Susztak, Upenn
month_released!
June, 2019
May, 2023
BIOSAMPLE
ASSAY
727 results
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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
RNA microarray
total RNA-seq
pCHi-C
snATAC-seq
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
41
30
26
4
7
3
1
4
bone element
84
liver
23
1
20
20
1
1
1
3
left cardiac atrium
40
18
kidney
53
1
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