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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
168
single cell RNA-seq
158
ATAC-seq
149
ChIP-seq
124
total RNA-seq
86
RNA microarray
28
snATAC-seq
23
pCHi-C
15
Hi-C
11
RRBS
6
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
292
Transcription
187
DNA accessibility
149
DNA binding
17
DNA methylation
15
3D chromatin structure
Target of assay
131
histone
131
histone modification
70
narrow histone mark
61
broad histone mark
15
control
5
RNA binding protein
5
transcription factor
2
nucleotide modification
Date released
222
August, 2021
93
February, 2021
74
August, 2017
59
February, 2023
55
October, 2019
47
September, 2023
42
May, 2022
40
May, 2024
28
March, 2020
20
February, 2020
19
April, 2020
14
May, 2023
13
July, 2019
13
November, 2017
8
January, 2021
8
October, 2017
4
July, 2018
4
March, 2019
4
November, 2020
3
December, 2019
2
May, 2021
1
April, 2019
1
August, 2022
1
January, 2018
1
November, 2019
Available data
bam
1279
bigWig
871
bed narrowPeak
663
tsv
489
bigBed narrowPeak
334
fastq
230
tagAlign
205
bed broadPeak
194
bed bed3+
169
bigBed broadPeak
157
txt
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
775
Homo sapiens
Biosample type
776
tissue
150
primary cell
102
in vitro differentiated cells
80
cell line
7
stem cell
Organ
201
kidney
181
heart
92
bone element
76
pancreas
73
liver
53
eye
49
connective tissue
adipose tissue
46
blood vessel
vasculature
39
artery
39
brain
38
musculature of body
20
lung
15
epithelium
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
681
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
120
GRCh38
101
hg19
Lab
449
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
files.file_type!
bam
lab.title!
Klaus Kaestner, Upenn
organ_slims!
adipose tissue
vasculature
BIOSAMPLE
ASSAY
776 results
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single cell RNA-seq
ATAC-seq
ChIP-seq
total RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
64
75
49
6
1
1
islet of Langerhans
30
41
26
7
4
3
1
4
bone element
84
liver
1
20
23
20
1
1
1
3
left cardiac atrium
18
40
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