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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
176
ATAC-seq
173
single cell RNA-seq
110
total RNA-seq
87
RNA microarray
84
ChIP-seq
27
snATAC-seq
25
pCHi-C
16
Hi-C
6
RRBS
4
MeRIP-seq
3
WGBS
3
snDrop-seq
Assay category
283
Transcription
203
DNA accessibility
84
DNA binding
16
3D chromatin structure
9
DNA methylation
Target of assay
78
histone
78
histone modification
49
narrow histone mark
29
broad histone mark
5
RNA binding protein
5
transcription factor
3
control
2
nucleotide modification
Date released
229
August, 2021
August, 2017
95
February, 2023
93
February, 2021
56
October, 2019
47
September, 2023
May, 2022
40
May, 2024
31
March, 2020
25
February, 2020
19
April, 2020
15
May, 2023
13
July, 2019
13
November, 2017
8
January, 2021
8
October, 2017
4
July, 2018
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
2
May, 2021
1
April, 2019
1
August, 2022
1
November, 2019
Available data
bam
1574
bigWig
987
tsv
880
bed narrowPeak
539
bigBed narrowPeak
187
bed broadPeak
179
tagAlign
178
bed bed3+
178
fastq
176
bigBed broadPeak
150
txt
64
xls
20
bed bedMethyl
20
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
712
Homo sapiens
Biosample type
714
tissue
344
primary cell
89
in vitro differentiated cells
80
cell line
7
stem cell
Organ
201
kidney
181
heart
92
bone element
56
pancreas
53
eye
46
blood vessel
46
vasculature
39
artery
39
brain
20
lung
15
epithelium
10
musculature of body
9
connective tissue
8
adipose tissue
8
limb
8
skeleton
5
gonad
5
liver
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
619
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
156
GRCh38
63
hg19
Lab
427
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
8
audit script error
Audit category:
1
missing controlled_by
files.file_type!
bam
month_released!
August, 2017
May, 2022
BIOSAMPLE
ASSAY
714 results
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Clear Filters
ATAC-seq
single cell RNA-seq
total RNA-seq
RNA microarray
ChIP-seq
snATAC-seq
pCHi-C
Hi-C
RRBS
MeRIP-seq
WGBS
snDrop-seq
tissue
kidney
75
64
49
6
1
1
islet of Langerhans
30
26
21
7
4
3
1
4
bone element
84
left cardiac atrium
18
40
coronary artery
35
1
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