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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ATAC-seq
173
single cell RNA-seq
163
ChIP-seq
128
total RNA-seq
87
RNA microarray
27
snATAC-seq
24
pCHi-C
10
Hi-C
10
WGBS
7
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
301
Transcription
223
DNA accessibility
163
DNA binding
17
DNA methylation
10
3D chromatin structure
Target of assay
143
histone
143
histone modification
74
narrow histone mark
69
broad histone mark
17
control
5
RNA binding protein
5
transcription factor
2
nucleotide modification
Date released
229
August, 2021
95
February, 2023
93
February, 2021
88
August, 2017
56
October, 2019
47
September, 2023
40
May, 2022
40
May, 2024
28
March, 2020
23
February, 2020
19
April, 2020
15
May, 2023
13
November, 2017
9
July, 2019
8
January, 2021
8
October, 2017
4
July, 2018
4
March, 2019
4
November, 2020
3
December, 2019
2
May, 2021
1
April, 2019
1
August, 2022
1
January, 2018
1
November, 2019
Available data
bam
1715
bigWig
1069
tsv
933
bed narrowPeak
523
bigBed narrowPeak
375
fastq
223
tagAlign
172
bed bed3+
168
bed broadPeak
156
txt
144
bigBed broadPeak
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
9
hic
8
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
830
Homo sapiens
Biosample type
832
tissue
478
primary cell
102
in vitro differentiated cells
80
cell line
7
stem cell
Organ
201
kidney
181
heart
92
bone element
76
pancreas
73
liver
53
eye
49
connective tissue
48
adipose tissue
46
blood vessel
46
vasculature
39
artery
39
brain
musculature of body
20
lung
15
epithelium
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
737
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
156
GRCh38
88
hg19
Lab
505
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
8
audit script error
Audit category:
1
missing controlled_by
files.file_type!
bam
month_released!
August, 2018
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
832 results
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ATAC-seq
single cell RNA-seq
ChIP-seq
total RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
WGBS
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
75
64
49
6
1
1
islet of Langerhans
30
41
26
7
4
3
1
4
bone element
84
liver
20
1
23
20
1
1
3
1
left cardiac atrium
18
40
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