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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
193
ATAC-seq
174
single cell RNA-seq
127
total RNA-seq
86
RNA microarray
28
snATAC-seq
24
pCHi-C
18
ChIP-seq
16
Hi-C
11
RRBS
6
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
301
Transcription
222
DNA accessibility
18
DNA binding
17
DNA methylation
16
3D chromatin structure
Target of assay
131
histone
histone modification
70
narrow histone mark
61
broad histone mark
15
control
5
RNA binding protein
5
transcription factor
2
nucleotide modification
Date released
228
August, 2021
94
February, 2023
93
February, 2021
47
September, 2023
42
May, 2022
32
October, 2019
30
March, 2020
23
February, 2020
21
August, 2017
19
April, 2020
14
May, 2023
13
July, 2019
8
January, 2021
5
May, 2024
4
July, 2018
4
March, 2019
4
November, 2020
3
December, 2019
2
May, 2021
2
October, 2017
1
August, 2022
1
January, 2018
1
November, 2019
Available data
bam
829
bigWig
677
tsv
453
bed narrowPeak
261
fastq
240
bigBed narrowPeak
187
bed bed3+
176
bed broadPeak
174
bigBed broadPeak
157
txt
64
xls
51
tagAlign
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
690
Homo sapiens
Biosample type
691
tissue
445
primary cell
77
cell line
69
in vitro differentiated cells
7
stem cell
Organ
201
kidney
145
heart
92
bone element
62
pancreas
53
liver
51
eye
46
blood vessel
46
vasculature
39
artery
20
lung
19
musculature of body
18
brain
adipose tissue
17
connective tissue
15
epithelium
8
skeleton
7
limb
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
596
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
118
GRCh38
79
hg19
Lab
399
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
9
audit script error
files.file_type!
bam
organ_slims!
adipose tissue
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
691 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
RNA microarray
snATAC-seq
pCHi-C
ChIP-seq
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
75
64
49
6
1
1
bone element
84
islet of Langerhans
30
26
7
4
6
3
1
4
liver
20
1
20
1
3
1
1
3
coronary artery
35
1
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