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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
total RNA-seq
30
ATAC-seq
24
ChIP-seq
6
pCHi-C
1
RRBS
Assay category
31
Transcription
30
DNA accessibility
24
DNA binding
1
DNA methylation
Target of assay
23
histone
23
histone modification
14
narrow histone mark
9
broad histone mark
1
control
Date released
32
February, 2023
24
October, 2019
13
February, 2020
13
November, 2017
7
October, 2017
2
March, 2020
1
July, 2019
Available data
bam
222
bed narrowPeak
205
bigWig
119
bigBed narrowPeak
118
tagAlign
39
bed broadPeak
30
bed bed3+
30
bigBed broadPeak
28
tsv
12
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
92
Homo sapiens
Biosample type
92
tissue
5
primary cell
Organ
201
kidney
181
heart
92
bone element
76
pancreas
73
liver
53
eye
49
connective tissue
48
adipose tissue
46
blood vessel
46
vasculature
39
artery
39
brain
38
musculature of body
20
lung
15
epithelium
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
spleen
1
stomach
1
urinary bladder
Project
92
AMP
Genome assembly (visualization)
32
hg19
2
GRCh38
Lab
92
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bam
organ_slims!
spleen
BIOSAMPLE
ASSAY
92 results
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total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
RRBS
tissue
islet of Langerhans
14
2
2
4
retina
3
15
pigmented layer of retina
2
12
brain
1
7
1
cingulate gyrus
6
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