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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
64
single cell RNA-seq
49
total RNA-seq
6
snATAC-seq
4
ChIP-seq
3
snDrop-seq
2
RNA microarray
1
Hi-C
1
RRBS
1
pCHi-C
Assay category
113
Transcription
81
DNA accessibility
4
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
4
histone
4
histone modification
4
narrow histone mark
Date released
128
August, 2021
47
September, 2023
14
May, 2023
8
February, 2021
4
October, 2019
3
December, 2019
1
July, 2019
1
March, 2020
Available data
153
bed narrowPeak
bam
91
bigWig
87
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
62
txt
13
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
206
Homo sapiens
Biosample type
206
tissue
5
primary cell
4
cell line
Organ
201
kidney
181
heart
92
bone element
76
pancreas
73
liver
53
eye
49
connective tissue
48
adipose tissue
46
blood vessel
46
vasculature
39
artery
39
brain
38
musculature of body
20
lung
15
epithelium
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
159
AMP
47
KPMP
Genome assembly (visualization)
75
GRCh38
2
hg19
Lab
142
Katalin Susztak, Upenn
47
KPMP
17
AMP-T2D consortium
Audit category:
7
audit script error
files.file_type!
bam
BIOSAMPLE
ASSAY
206 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
ChIP-seq
snDrop-seq
RNA microarray
Hi-C
RRBS
pCHi-C
tissue
kidney
75
64
49
6
1
1
islet of Langerhans
4
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
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