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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
157
single cell RNA-seq
110
ATAC-seq
52
total RNA-seq
41
ChIP-seq
6
snATAC-seq
4
Hi-C
3
pCHi-C
3
snDrop-seq
2
RNA microarray
2
RRBS
2
WGBS
Assay category
209
Transcription
116
DNA accessibility
41
DNA binding
4
3D chromatin structure
4
DNA methylation
Target of assay
36
histone
36
histone modification
20
broad histone mark
16
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
220
August, 2021
47
September, 2023
40
May, 2024
36
February, 2023
14
May, 2023
8
February, 2021
5
March, 2020
4
July, 2019
3
December, 2019
3
February, 2020
1
April, 2019
1
October, 2019
Available data
326
bed narrowPeak
248
bigWig
bam
175
bigBed narrowPeak
123
tsv
95
bed bed3+
95
bed broadPeak
95
bigBed broadPeak
64
xls
62
txt
8
bed bedMethyl
8
bigBed bedMethyl
5
csv
4
hic
3
bedpe bed3+
Organism
382
Homo sapiens
Biosample type
382
tissue
6
primary cell
4
cell line
Organ
201
kidney
181
heart
92
bone element
76
pancreas
73
liver
53
eye
49
connective tissue
48
adipose tissue
46
blood vessel
46
vasculature
39
artery
39
brain
38
musculature of body
20
lung
15
epithelium
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
335
AMP
47
KPMP
Genome assembly (visualization)
150
GRCh38
7
hg19
Lab
153
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
Audit category:
7
audit script error
files.file_type!
bam
BIOSAMPLE
ASSAY
382 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
Hi-C
pCHi-C
snDrop-seq
RNA microarray
RRBS
WGBS
tissue
kidney
64
75
49
6
1
1
left cardiac atrium
18
40
coronary artery
35
1
heart left ventricle
18
1
1
1
1
2
heart right ventricle
17
1
1
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