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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ATAC-seq
64
single cell RNA-seq
53
total RNA-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
1
Hi-C
1
RRBS
Assay category
117
Transcription
85
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Date released
128
August, 2021
47
September, 2023
14
May, 2023
8
February, 2021
8
February, 2023
3
December, 2019
1
July, 2019
Available data
161
bed narrowPeak
bam
91
bigWig
87
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
66
txt
64
xls
12
tsv
5
csv
4
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
209
Homo sapiens
Biosample type
209
tissue
5
primary cell
4
cell line
Organ
201
kidney
181
heart
92
bone element
76
pancreas
73
liver
53
eye
49
connective tissue
48
adipose tissue
46
blood vessel
46
vasculature
39
artery
39
brain
38
musculature of body
20
lung
15
epithelium
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
162
AMP
47
KPMP
Genome assembly (visualization)
75
GRCh38
6
hg19
Lab
142
Katalin Susztak, Upenn
47
KPMP
20
AMP-T2D consortium
Audit category:
7
audit script error
files.file_type!
bam
BIOSAMPLE
ASSAY
209 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
snDrop-seq
RNA microarray
Hi-C
RRBS
tissue
kidney
75
64
49
6
1
1
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
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