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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1014
total RNA-seq
670
ChIP-seq
256
ATAC-seq
174
single cell RNA-seq
87
RNA microarray
27
snATAC-seq
23
pCHi-C
16
Hi-C
12
small RNA-seq
11
WGBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
2
DNase-seq
2
RRBS
Assay category
1200
Transcription
670
DNA binding
288
DNA accessibility
16
3D chromatin structure
13
DNA methylation
Target of assay
432
histone modification
431
histone
227
broad histone mark
204
narrow histone mark
159
control
81
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
253
August, 2017
229
August, 2021
193
May, 2020
152
October, 2019
120
July, 2018
94
February, 2023
87
May, 2019
80
April, 2019
74
October, 2018
65
May, 2022
53
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
38
March, 2020
19
April, 2020
15
May, 2023
13
February, 2020
11
November, 2018
8
January, 2021
7
December, 2018
7
January, 2019
7
October, 2017
April, 2018
5
March, 2019
4
November, 2020
4
September, 2017
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1675
bam
1564
bigWig
1047
tsv
792
bed narrowPeak
445
bigBed narrowPeak
359
fastq
bed bed3+
177
bed broadPeak
157
txt
149
bigBed broadPeak
120
tagAlign
64
xls
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
4
bed bed3
1
bedpe
Organism
2295
Homo sapiens
Biosample type
2304
tissue
986
primary cell
658
cell line
369
in vitro differentiated cells
7
stem cell
Organ
539
connective tissue
480
adipose tissue
466
pancreas
354
liver
279
heart
brain
230
kidney
158
bone element
127
blood vessel
127
vasculature
85
limb
69
artery
53
eye
46
musculature of body
41
nerve
22
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2207
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1457
GRCh38
1426
hg19
Lab
1952
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
8
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bed3+
bed bedMethyl
month_released!
April, 2018
organ_slims!
brain
BIOSAMPLE
ASSAY
2304 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
WGBS
MeRIP-seq
FAIRE-seq
snDrop-seq
DNase-seq
RRBS
tissue
islet of Langerhans
292
50
67
7
4
3
4
1
1
adipose tissue
382
2
3
1
1
liver
167
142
20
1
1
1
1
3
kidney
49
27
75
64
6
1
1
bone element
84
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