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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
697
ChIP-seq
259
ATAC-seq
106
total RNA-seq
85
RNA microarray
71
single cell RNA-seq
27
WGBS
27
snATAC-seq
16
Hi-C
11
RRBS
5
pCHi-C
4
FAIRE-seq
2
DNase-seq
2
MeRIP-seq
Assay category
697
DNA binding
292
DNA accessibility
177
Transcription
38
DNA methylation
16
3D chromatin structure
Target of assay
616
histone modification
615
histone
318
narrow histone mark
297
broad histone mark
control
81
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
203
October, 2019
141
August, 2017
130
August, 2021
93
February, 2021
93
May, 2019
91
February, 2023
70
November, 2017
66
April, 2019
65
May, 2022
47
September, 2023
45
October, 2018
40
May, 2024
36
December, 2017
30
July, 2019
27
May, 2020
21
November, 2019
20
October, 2017
19
April, 2020
15
May, 2023
14
November, 2018
12
March, 2020
8
January, 2021
6
January, 2019
5
March, 2019
4
July, 2018
3
December, 2018
2
January, 2018
2
May, 2021
2
November, 2020
1
August, 2022
1
December, 2019
Available data
1772
bigWig
1740
bam
tsv
984
bed narrowPeak
561
bigBed narrowPeak
310
fastq
213
bed broadPeak
bed bed3+
186
tagAlign
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1304
Homo sapiens
Biosample type
1312
tissue
749
primary cell
457
cell line
199
in vitro differentiated cells
3
stem cell
Organ
213
kidney
190
brain
176
pancreas
159
heart
156
liver
100
bone element
98
blood vessel
98
vasculature
62
limb
60
connective tissue
59
adipose tissue
58
artery
48
eye
38
musculature of body
25
nerve
19
lung
16
skeleton
15
spleen
12
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
1215
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
738
GRCh38
648
hg19
Lab
963
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
2
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
27
inconsistent control
1
audit script error
Audit category:
12
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bed3+
bed bedgraph
tsv
target.investigated_as!
control
BIOSAMPLE
ASSAY
1312 results
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ChIP-seq
ATAC-seq
total RNA-seq
RNA microarray
single cell RNA-seq
WGBS
snATAC-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
DNase-seq
MeRIP-seq
tissue
kidney
21
75
49
59
6
1
1
1
islet of Langerhans
39
67
31
7
3
1
4
1
1
2
liver
100
20
20
1
3
1
1
bone element
84
left cardiac atrium
40
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