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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
981
total RNA-seq
817
ChIP-seq
183
ATAC-seq
116
single cell RNA-seq
85
RNA microarray
27
WGBS
25
pCHi-C
21
snATAC-seq
15
Hi-C
15
small RNA-seq
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
2
DNase-seq
Assay category
1112
Transcription
817
DNA binding
209
DNA accessibility
37
DNA methylation
15
3D chromatin structure
Target of assay
561
histone modification
560
histone
293
narrow histone mark
267
broad histone mark
178
control
80
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
234
October, 2019
232
August, 2017
193
May, 2020
120
July, 2018
115
May, 2019
101
August, 2021
95
February, 2023
76
November, 2017
74
October, 2018
73
July, 2019
65
May, 2022
57
April, 2019
48
December, 2017
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
19
April, 2020
19
October, 2017
17
November, 2018
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
4
March, 2019
4
November, 2020
4
September, 2017
2
January, 2018
1
August, 2022
1
May, 2023
Available data
1809
bam
1681
bigWig
1064
tsv
831
bed narrowPeak
474
bigBed narrowPeak
377
fastq
238
tagAlign
bed broadPeak
bed bed3+
108
bigBed broadPeak
95
txt
24
bed bedMethyl
24
bigBed bedMethyl
10
bedpe bed3+
10
hic
5
bed bed3
1
bedpe
1
csv
1
tagAlign bed3+
Organism
2301
Homo sapiens
Biosample type
2304
tissue
985
primary cell
582
cell line
368
in vitro differentiated cells
7
stem cell
Organ
540
connective tissue
481
adipose tissue
464
pancreas
355
liver
286
heart
kidney
229
brain
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
41
nerve
36
musculature of body
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2254
AMP
31
T1D
19
LungMap
Genome assembly (visualization)
1543
GRCh38
1505
hg19
Lab
2143
AMP-T2D consortium
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
90
inconsistent ontology term
27
inconsistent control
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
bed bed3+
bed broadPeak
organ_slims!
kidney
vein
BIOSAMPLE
ASSAY
2304 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
DNase-seq
tissue
islet of Langerhans
292
44
66
6
4
7
3
1
4
1
1
adipose tissue
382
2
3
3
1
liver
167
142
20
1
3
1
1
1
1
bone element
84
heart left ventricle
3
35
2
18
4
1
1
1
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