Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
861
total RNA-seq
239
ATAC-seq
181
ChIP-seq
179
single cell RNA-seq
87
RNA microarray
27
snATAC-seq
24
pCHi-C
23
WGBS
15
Hi-C
13
small RNA-seq
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
1053
Transcription
271
DNA accessibility
181
DNA binding
33
DNA methylation
15
3D chromatin structure
Target of assay
546
histone
histone modification
274
narrow histone mark
272
broad histone mark
139
control
44
transcription factor
24
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
544
February, 2021
229
August, 2021
128
August, 2017
120
July, 2018
95
February, 2023
69
July, 2019
69
October, 2019
47
September, 2023
44
October, 2018
40
May, 2021
40
November, 2019
35
March, 2020
26
May, 2019
25
May, 2022
24
February, 2020
20
April, 2019
19
April, 2020
15
May, 2023
13
November, 2018
12
November, 2017
11
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
5
March, 2019
5
May, 2024
4
November, 2020
4
September, 2017
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1203
bam
1035
bigWig
922
tsv
401
bed narrowPeak
238
fastq
210
bigBed narrowPeak
bed bed3+
175
bed broadPeak
173
bigBed broadPeak
157
txt
64
xls
26
tagAlign
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
5
bed bed3
5
csv
1
bedpe
Organism
1668
Homo sapiens
Biosample type
1671
tissue
485
primary cell
262
in vitro differentiated cells
239
cell line
7
stem cell
Organ
508
connective tissue
450
adipose tissue
417
pancreas
liver
211
kidney
191
heart
158
bone element
74
blood vessel
74
vasculature
54
brain
51
eye
49
artery
37
limb
24
musculature of body
20
lung
18
spleen
17
nerve
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1576
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
983
GRCh38
928
hg19
Lab
1394
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
8
audit script error
Audit category:
8
missing controlled_by
files.file_type!
bed bed3+
lab.title!
Klaus Kaestner, Upenn
organ_slims!
liver
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
1671 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
292
68
11
6
7
4
3
1
1
4
1
adipose tissue
382
3
1
1
3
kidney
49
75
7
64
6
1
1
1
bone element
84
bone tissue
58
+ See 97 more…
See all biosamples
Download