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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
942
total RNA-seq
725
ChIP-seq
258
ATAC-seq
180
single cell RNA-seq
87
RNA microarray
27
snATAC-seq
24
pCHi-C
18
WGBS
16
Hi-C
16
small RNA-seq
6
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
1138
Transcription
725
DNA binding
288
DNA accessibility
24
DNA methylation
16
3D chromatin structure
Target of assay
500
histone
500
histone modification
270
narrow histone mark
230
broad histone mark
156
control
71
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
August, 2017
234
October, 2019
229
August, 2021
193
May, 2020
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
65
May, 2022
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
39
March, 2020
25
February, 2020
23
October, 2017
19
April, 2020
17
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
5
March, 2019
4
November, 2020
4
September, 2017
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1737
bam
1594
bigWig
986
tsv
918
bed narrowPeak
539
bigBed narrowPeak
202
fastq
187
bed broadPeak
bed bed3+
179
tagAlign
176
bigBed broadPeak
157
txt
64
xls
20
bed bedMethyl
20
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2307
Homo sapiens
Biosample type
2309
tissue
992
primary cell
659
cell line
269
in vitro differentiated cells
7
stem cell
Organ
488
connective tissue
429
adipose tissue
350
pancreas
304
liver
286
heart
238
brain
231
kidney
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
41
nerve
24
spleen
23
musculature of body
20
lung
16
skeleton
15
epithelium
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2212
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1523
GRCh38
1412
hg19
Lab
1957
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent control read length
files.file_type!
bed bed3+
month_released!
August, 2017
February, 2018
organ_slims!
gonad
BIOSAMPLE
ASSAY
2309 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
adipose tissue
382
3
1
islet of Langerhans
203
23
68
6
7
4
3
1
4
liver
167
97
20
1
1
1
1
kidney
49
27
75
64
6
1
1
1
bone element
84
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