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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
6
Hi-C
5
total RNA-seq
4
RRBS
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
Assay category
29
DNA binding
7
Transcription
6
3D chromatin structure
5
DNA methylation
1
DNA accessibility
Target of assay
25
histone
25
histone modification
16
broad histone mark
9
narrow histone mark
4
control
Date released
26
August, 2017
7
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
1
January, 2018
1
May, 2022
Available data
57
bigWig
51
bed narrowPeak
45
bed broadPeak
44
bam
38
bigBed narrowPeak
bed bed3+
32
bigBed broadPeak
15
tagAlign
7
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
49
Homo sapiens
Biosample type
49
tissue
13
primary cell
Organ
478
pancreas
354
liver
286
heart
238
brain
223
kidney
128
blood vessel
128
vasculature
97
connective tissue
96
adipose tissue
80
limb
69
artery
53
eye
49
musculature of body
41
nerve
24
spleen
20
lung
15
epithelium
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
49
AMP
Genome assembly (visualization)
28
hg19
10
GRCh38
Lab
49
AMP-T2D consortium
files.file_type!
bed bed3+
month_released!
February, 2021
BIOSAMPLE
ASSAY
49 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
muscle of leg
7
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
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