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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
455
total RNA-seq
50
ChIP-seq
6
WGBS
5
ATAC-seq
2
small RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
457
Transcription
50
DNA binding
6
DNA methylation
5
DNA accessibility
Target of assay
33
histone
33
histone modification
24
control
broad histone mark
13
narrow histone mark
13
transcription factor
5
RNA binding protein
Date released
444
February, 2021
33
August, 2017
23
October, 2018
10
July, 2019
2
February, 2020
2
October, 2019
1
August, 2021
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
Available data
498
bam
481
bigWig
457
tsv
43
fastq
12
bed narrowPeak
10
bigBed narrowPeak
bed bed3+
4
tagAlign
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
519
Homo sapiens
Biosample type
520
tissue
55
in vitro differentiated cells
27
primary cell
1
stem cell
Organ
520
connective tissue
461
adipose tissue
425
pancreas
330
liver
221
kidney
193
heart
167
brain
150
bone element
57
blood vessel
57
vasculature
52
limb
33
musculature of body
25
nerve
22
eye
20
artery
20
lung
20
spleen
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
520
AMP
Genome assembly (visualization)
475
hg19
474
GRCh38
Lab
520
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
8
missing controlled_by
files.file_type!
bed bed3+
month_released!
February, 2023
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
520 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
small RNA-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
2
3
2
1
bone tissue
58
subcutaneous adipose tissue
7
12
1
1
1
subcutaneous abdominal adipose tissue
16
3
omental fat pad
5
11
1
1
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