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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
6
Hi-C
5
total RNA-seq
4
RRBS
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
Assay category
29
DNA binding
7
Transcription
6
3D chromatin structure
5
DNA methylation
Target of assay
25
histone
25
histone modification
16
broad histone mark
9
narrow histone mark
4
control
Date released
26
August, 2017
7
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
January, 2018
1
May, 2022
Available data
56
bigWig
51
bed narrowPeak
45
bed broadPeak
44
bam
38
bigBed narrowPeak
bed bed3+
32
bigBed broadPeak
15
tagAlign
7
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
48
Homo sapiens
Biosample type
48
tissue
13
primary cell
Organ
540
connective tissue
481
adipose tissue
478
pancreas
355
liver
286
heart
238
brain
231
kidney
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
48
musculature of body
41
nerve
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
48
AMP
Genome assembly (visualization)
27
hg19
10
GRCh38
Lab
48
AMP-T2D consortium
files.file_type!
bed bed3+
month_released!
January, 2018
BIOSAMPLE
ASSAY
48 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
tissue
skeletal muscle tissue
22
1
4
1
1
muscle of leg
7
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
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