Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
861
total RNA-seq
449
ChIP-seq
239
ATAC-seq
179
single cell RNA-seq
87
RNA microarray
27
snATAC-seq
24
pCHi-C
23
WGBS
15
Hi-C
13
small RNA-seq
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
1053
Transcription
449
DNA binding
271
DNA accessibility
33
DNA methylation
15
3D chromatin structure
Target of assay
546
histone
546
histone modification
narrow histone mark
272
broad histone mark
135
control
44
transcription factor
24
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
544
February, 2021
229
August, 2021
176
August, 2017
120
July, 2018
105
October, 2019
95
February, 2023
82
May, 2019
69
July, 2019
63
October, 2018
57
April, 2019
54
November, 2017
47
September, 2023
40
May, 2021
40
November, 2019
35
March, 2020
25
May, 2022
25
May, 2024
24
February, 2020
21
October, 2017
19
April, 2020
15
May, 2023
13
November, 2018
8
January, 2021
7
December, 2018
6
April, 2018
5
January, 2019
5
March, 2019
4
November, 2020
September, 2017
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1406
bam
1275
bigWig
922
tsv
641
bed narrowPeak
407
bigBed narrowPeak
267
fastq
195
bed broadPeak
bed bed3+
173
bigBed broadPeak
157
txt
91
tagAlign
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
5
bed bed3
5
csv
1
bedpe
Organism
1932
Homo sapiens
Biosample type
1939
tissue
925
primary cell
308
in vitro differentiated cells
249
cell line
7
stem cell
Organ
528
connective tissue
470
adipose tissue
448
pancreas
liver
248
heart
221
kidney
158
bone element
124
brain
110
blood vessel
110
vasculature
71
limb
63
artery
51
eye
40
musculature of body
33
nerve
22
spleen
20
lung
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1844
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1206
GRCh38
1107
hg19
Lab
1642
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
25
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
8
audit script error
Audit category:
11
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bed3+
month_released!
September, 2017
organ_slims!
liver
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
1939 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
292
15
68
6
7
4
3
1
1
4
1
adipose tissue
382
1
3
1
3
kidney
49
17
75
64
6
1
1
1
bone element
84
bone tissue
58
+ See 97 more…
See all biosamples
Download