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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
950
total RNA-seq
877
ChIP-seq
220
ATAC-seq
180
single cell RNA-seq
27
WGBS
27
snATAC-seq
20
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
2
DNase-seq
Assay category
1146
Transcription
877
DNA binding
253
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
614
histone modification
613
histone
316
narrow histone mark
297
broad histone mark
184
control
81
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
395
February, 2021
258
August, 2017
229
August, 2021
217
October, 2019
193
May, 2020
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
65
May, 2022
56
February, 2023
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
39
March, 2020
24
February, 2020
23
October, 2017
19
April, 2020
17
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
5
March, 2019
4
November, 2020
4
September, 2017
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1838
bam
1711
bigWig
1012
tsv
946
bed narrowPeak
558
bigBed narrowPeak
377
fastq
238
tagAlign
210
bed broadPeak
bed bed3+
173
bigBed broadPeak
69
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2351
Homo sapiens
Biosample type
2360
tissue
1046
primary cell
659
cell line
369
in vitro differentiated cells
7
stem cell
Organ
541
connective tissue
482
adipose tissue
478
pancreas
355
liver
286
heart
238
brain
231
kidney
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
eye
49
musculature of body
41
nerve
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2263
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1589
GRCh38
1469
hg19
Lab
2008
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
8
audit script error
6
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bed3+
organ_slims!
bone element
eye
small intestine
BIOSAMPLE
ASSAY
2360 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
DNase-seq
tissue
islet of Langerhans
278
48
67
6
7
3
1
1
4
1
adipose tissue
382
2
3
3
1
liver
167
142
20
1
3
1
1
1
1
kidney
49
27
75
64
6
1
1
1
heart left ventricle
3
35
2
18
4
1
1
1
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