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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
225
ChIP-seq
177
total RNA-seq
59
ATAC-seq
7
single cell RNA-seq
6
WGBS
3
small RNA-seq
2
Hi-C
2
pCHi-C
1
DNase-seq
1
RRBS
Assay category
225
DNA binding
187
Transcription
60
DNA accessibility
7
DNA methylation
2
3D chromatin structure
Target of assay
124
histone modification
123
histone
62
narrow histone mark
61
broad histone mark
61
control
40
transcription factor
5
RNA binding protein
2
chromatin remodeller
Date released
193
May, 2020
51
August, 2017
50
May, 2019
48
December, 2017
40
May, 2022
35
February, 2023
30
October, 2019
15
July, 2019
6
August, 2021
6
March, 2020
4
February, 2020
4
November, 2018
1
February, 2021
Available data
375
bam
335
bigWig
213
bed narrowPeak
168
tsv
111
bigBed narrowPeak
83
fastq
70
tagAlign
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
csv
Organism
483
Homo sapiens
Biosample type
483
tissue
466
cell line
37
primary cell
15
in vitro differentiated cells
Organ
541
connective tissue
482
adipose tissue
pancreas
355
liver
286
heart
238
brain
231
kidney
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
49
musculature of body
41
nerve
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
483
AMP
Genome assembly (visualization)
332
GRCh38
327
hg19
Lab
443
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
files.file_type!
bed bed3+
organ_slims!
pancreas
BIOSAMPLE
ASSAY
483 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
small RNA-seq
Hi-C
pCHi-C
DNase-seq
RRBS
tissue
liver
142
167
20
1
3
1
1
1
1
coronary artery
5
1
36
tibial artery
23
1
1
aorta
13
1
4
2
1
1
thoracic aorta
16
2
1
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