Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1009
total RNA-seq
635
ChIP-seq
251
ATAC-seq
180
single cell RNA-seq
87
RNA microarray
27
WGBS
27
snATAC-seq
23
pCHi-C
16
Hi-C
12
small RNA-seq
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
2
DNase-seq
Assay category
1201
Transcription
635
DNA binding
283
DNA accessibility
37
DNA methylation
16
3D chromatin structure
Target of assay
408
histone modification
407
histone
211
broad histone mark
196
narrow histone mark
148
control
81
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
258
August, 2017
229
August, 2021
193
May, 2020
120
July, 2018
112
October, 2019
90
February, 2023
87
May, 2019
80
April, 2019
74
October, 2018
66
July, 2019
65
May, 2022
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
38
March, 2020
19
April, 2020
17
November, 2018
15
May, 2023
12
February, 2020
8
January, 2021
7
December, 2018
7
January, 2019
7
October, 2017
6
April, 2018
5
March, 2019
4
November, 2020
4
September, 2017
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1639
bam
1539
bigWig
1048
tsv
765
bed narrowPeak
419
bigBed narrowPeak
365
fastq
bed bed3+
175
bed broadPeak
157
txt
147
bigBed broadPeak
120
tagAlign
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
bed bed3
1
bedpe
Organism
2280
Homo sapiens
Biosample type
2289
tissue
1037
primary cell
658
cell line
364
in vitro differentiated cells
7
stem cell
Organ
541
connective tissue
482
adipose tissue
478
pancreas
355
liver
286
heart
brain
231
kidney
154
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
49
musculature of body
nerve
24
spleen
20
lung
15
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2192
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1450
GRCh38
1407
hg19
Lab
1937
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
8
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bed3
bed bed3+
organ_slims!
brain
nerve
BIOSAMPLE
ASSAY
2289 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
292
50
67
6
7
4
3
1
4
1
1
adipose tissue
382
2
3
3
1
liver
167
142
20
1
3
1
1
1
1
kidney
49
27
75
64
6
1
1
1
bone element
84
+ See 82 more…
See all biosamples
Download