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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
996
total RNA-seq
468
ChIP-seq
193
ATAC-seq
87
RNA microarray
87
single cell RNA-seq
28
snATAC-seq
22
pCHi-C
19
WGBS
15
small RNA-seq
13
Hi-C
10
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
1098
Transcription
468
DNA binding
222
DNA accessibility
29
DNA methylation
13
3D chromatin structure
Target of assay
275
histone modification
274
histone
198
narrow histone mark
171
control
76
broad histone mark
24
transcription factor
3
RNA binding protein
2
nucleotide modification
Date released
545
February, 2021
262
August, 2017
193
May, 2020
187
October, 2019
137
August, 2021
120
July, 2018
55
July, 2019
54
February, 2023
47
September, 2023
40
November, 2019
38
May, 2021
33
March, 2020
29
October, 2018
26
May, 2022
25
November, 2017
22
February, 2020
19
April, 2020
17
October, 2017
16
May, 2019
15
May, 2023
12
December, 2017
9
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
April, 2019
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1775
bam
1595
bigWig
965
tsv
791
bed narrowPeak
bigBed narrowPeak
377
fastq
238
tagAlign
186
bed broadPeak
178
bed bed3+
157
txt
149
bigBed broadPeak
64
xls
18
bed bedMethyl
18
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1943
Homo sapiens
Biosample type
1946
tissue
971
primary cell
371
in vitro differentiated cells
240
cell line
10
stem cell
Organ
537
connective tissue
478
adipose tissue
443
pancreas
272
liver
heart
212
kidney
154
bone element
148
brain
71
blood vessel
71
vasculature
53
eye
48
artery
44
musculature of body
38
limb
20
lung
17
nerve
15
epithelium
12
skeleton
12
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1849
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1210
hg19
1201
GRCh38
Lab
1674
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
9
audit script error
Audit category:
23
missing controlled_by
files.file_type!
bed bed3
bigBed narrowPeak
lab.title!
Karen Mohlke, UNC
organ_slims!
heart
BIOSAMPLE
ASSAY
1946 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
RNA microarray
single cell RNA-seq
snATAC-seq
pCHi-C
WGBS
small RNA-seq
Hi-C
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
292
71
68
6
7
4
3
1
4
adipose tissue
382
1
2
1
3
liver
147
107
1
1
3
1
1
1
kidney
49
9
75
64
6
1
1
bone element
84
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