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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
718
ChIP-seq
576
total RNA-seq
249
ATAC-seq
180
single cell RNA-seq
176
DNase-seq
86
RNA microarray
28
snATAC-seq
24
pCHi-C
21
WGBS
14
small RNA-seq
11
RRBS
5
Hi-C
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
770
Transcription
718
DNA binding
457
DNA accessibility
32
DNA methylation
5
3D chromatin structure
Target of assay
506
histone modification
505
histone
278
narrow histone mark
227
broad histone mark
141
control
73
transcription factor
19
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
239
October, 2019
227
August, 2017
227
August, 2021
193
May, 2020
162
June, 2019
120
July, 2018
May, 2019
101
February, 2021
89
February, 2023
82
November, 2017
80
April, 2019
67
July, 2019
66
May, 2022
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
38
November, 2019
32
March, 2020
25
November, 2018
23
February, 2020
22
October, 2017
19
April, 2020
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1294
bam
1198
bigWig
878
bed narrowPeak
619
tsv
458
bigBed narrowPeak
334
fastq
230
tagAlign
210
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
hic
10
bedpe bed3+
6
csv
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2091
Homo sapiens
Biosample type
2099
tissue
1038
primary cell
659
cell line
293
in vitro differentiated cells
9
stem cell
Organ
connective tissue
500
pancreas
488
adipose tissue
360
liver
298
kidney
289
heart
236
brain
154
bone element
115
limb
82
blood vessel
82
vasculature
73
musculature of body
68
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
15
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2002
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1287
GRCh38
1164
hg19
Lab
1749
AMP-T2D consortium
141
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bed3
hic
month_released!
May, 2019
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
2099 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
small RNA-seq
RRBS
Hi-C
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
70
292
68
6
1
7
4
1
1
1
4
liver
145
167
20
1
2
1
3
1
1
kidney
27
49
75
64
13
6
1
1
bone element
84
heart left ventricle
35
3
2
18
3
1
4
1
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