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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
867
ChIP-seq
178
DNase-seq
125
ATAC-seq
85
RNA microarray
27
WGBS
25
total RNA-seq
13
Hi-C
11
RRBS
4
FAIRE-seq
4
pCHi-C
4
single cell RNA-seq
2
snATAC-seq
Assay category
867
DNA binding
309
DNA accessibility
38
DNA methylation
29
Transcription
13
3D chromatin structure
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
185
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
234
October, 2019
195
August, 2017
163
June, 2019
115
May, 2019
93
February, 2021
82
November, 2017
80
April, 2019
74
October, 2018
68
February, 2023
50
May, 2020
48
December, 2017
30
July, 2019
26
November, 2018
22
October, 2017
21
November, 2019
12
March, 2020
7
December, 2018
7
January, 2019
6
September, 2017
4
July, 2018
2
January, 2018
2
May, 2022
1
August, 2021
1
August, 2022
1
December, 2019
1
May, 2023
Available data
1882
bam
1711
bigWig
tsv
842
bed narrowPeak
561
bigBed narrowPeak
351
fastq
238
tagAlign
211
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
94
txt
25
bed bedMethyl
25
bigBed bedMethyl
9
bedpe bed3+
9
hic
6
csv
bed bed3
1
tagAlign bed3+
Organism
1337
Homo sapiens
Biosample type
1345
tissue
504
cell line
355
primary cell
204
in vitro differentiated cells
4
stem cell
Organ
241
brain
168
pancreas
167
liver
162
heart
119
blood vessel
119
vasculature
115
limb
98
kidney
96
bone element
90
connective tissue
89
adipose tissue
75
musculature of body
69
artery
51
eye
38
nerve
24
spleen
18
ureter
12
epithelium
12
skeleton
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
Project
1341
AMP
4
T1D
Genome assembly (visualization)
824
GRCh38
789
hg19
Lab
1345
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bed3
tsv
BIOSAMPLE
ASSAY
1345 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
RNA microarray
WGBS
total RNA-seq
Hi-C
RRBS
FAIRE-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
liver
145
2
3
1
1
1
islet of Langerhans
71
1
33
20
1
1
1
4
1
bone element
84
heart left ventricle
35
3
2
4
1
1
body of pancreas
35
4
4
2
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