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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
907
ChIP-seq
518
total RNA-seq
178
DNase-seq
163
single cell RNA-seq
152
ATAC-seq
27
WGBS
25
pCHi-C
22
snATAC-seq
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
Assay category
907
DNA binding
697
Transcription
356
DNA accessibility
38
DNA methylation
15
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
February, 2021
284
August, 2017
242
October, 2019
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
101
August, 2021
90
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
May, 2022
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
May, 2023
Available data
1455
bam
1308
bigWig
892
bed narrowPeak
624
tsv
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
25
bed bedMethyl
25
bigBed bedMethyl
11
txt
10
bedpe bed3+
10
hic
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2036
Homo sapiens
Biosample type
2045
tissue
1040
primary cell
566
cell line
363
in vitro differentiated cells
10
stem cell
Organ
505
pancreas
320
liver
313
heart
264
brain
149
kidney
133
blood vessel
133
vasculature
116
limb
103
connective tissue
102
adipose tissue
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
15
epithelium
5
gonad
5
ovary
4
bone element
4
skeleton
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1948
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1332
GRCh38
1277
hg19
Lab
1875
AMP-T2D consortium
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
7
inconsistent ontology term
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bed3
lab.title!
Karen Mohlke, UNC
Katalin Susztak, Upenn
month_released!
February, 2021
BIOSAMPLE
ASSAY
2045 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
single cell RNA-seq
ATAC-seq
WGBS
pCHi-C
snATAC-seq
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
tissue
islet of Langerhans
71
292
1
6
68
4
7
3
1
1
4
liver
145
147
2
3
1
1
1
1
kidney
27
13
48
1
1
heart left ventricle
35
3
3
18
2
4
1
1
1
left cardiac atrium
40
1
18
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