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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
811
ChIP-seq
634
total RNA-seq
249
ATAC-seq
180
single cell RNA-seq
176
DNase-seq
86
RNA microarray
28
snATAC-seq
24
pCHi-C
21
WGBS
16
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
828
Transcription
811
DNA binding
457
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
596
histone modification
595
histone
312
narrow histone mark
283
broad histone mark
163
control
77
transcription factor
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
241
October, 2019
228
August, 2021
225
August, 2017
193
May, 2020
162
June, 2019
159
February, 2021
120
July, 2018
111
May, 2019
89
February, 2023
82
November, 2017
76
April, 2019
67
July, 2019
66
May, 2022
47
September, 2023
46
December, 2017
45
October, 2018
40
May, 2021
39
March, 2020
39
November, 2019
35
May, 2024
25
November, 2018
23
February, 2020
22
October, 2017
19
April, 2020
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1449
bam
1327
bigWig
950
bed narrowPeak
677
tsv
536
bigBed narrowPeak
324
fastq
230
tagAlign
210
bed broadPeak
197
bed bed3+
174
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2253
Homo sapiens
Biosample type
2261
tissue
751
primary cell
596
cell line
377
in vitro differentiated cells
10
stem cell
Organ
542
connective tissue
497
pancreas
adipose tissue
359
liver
303
heart
298
kidney
264
brain
154
bone element
130
blood vessel
130
vasculature
122
limb
82
musculature of body
72
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
15
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2164
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1415
GRCh38
1309
hg19
Lab
1914
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
35
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
13
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bed3
lab.title!
Klaus Kaestner, Upenn
organ_slims!
adipose tissue
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
2261 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
69
292
68
6
1
7
4
3
1
1
4
liver
144
167
20
1
2
1
3
1
1
1
kidney
26
49
75
64
13
6
1
1
1
bone element
84
heart left ventricle
32
3
2
18
3
1
4
1
1
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