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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
283
total RNA-seq
110
ChIP-seq
62
ATAC-seq
11
snATAC-seq
7
DNase-seq
6
single cell RNA-seq
4
Hi-C
4
MeRIP-seq
4
WGBS
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
pCHi-C
Assay category
291
Transcription
110
DNA binding
82
DNA accessibility
6
DNA methylation
4
3D chromatin structure
Target of assay
67
histone
67
histone modification
37
broad histone mark
30
narrow histone mark
28
control
17
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
140
August, 2017
120
July, 2018
51
October, 2018
39
November, 2019
37
May, 2021
24
May, 2022
18
February, 2023
9
March, 2020
8
January, 2021
7
November, 2018
6
April, 2018
6
July, 2019
6
September, 2017
5
March, 2019
5
October, 2017
4
June, 2019
4
November, 2020
3
October, 2019
2
August, 2021
2
May, 2019
1
August, 2022
1
February, 2020
Available data
422
bam
367
bigWig
275
tsv
206
fastq
117
bed narrowPeak
56
bigBed narrowPeak
27
bed bed3+
14
bed broadPeak
9
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
bigBed broadPeak
6
txt
3
bedpe bed3+
3
hic
1
bedpe
Organism
498
Homo sapiens
Biosample type
498
tissue
346
primary cell
91
cell line
3
in vitro differentiated cells
Organ
546
connective tissue
498
pancreas
487
adipose tissue
361
liver
313
heart
299
kidney
264
brain
154
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
18
ureter
15
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
468
AMP
30
T1D
Genome assembly (visualization)
407
hg19
380
GRCh38
Lab
435
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
5
inconsistent control read length
files.file_type!
bed bed3
month_released!
April, 2020
BIOSAMPLE
ASSAY
498 results
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total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
MeRIP-seq
WGBS
FAIRE-seq
RRBS
small RNA-seq
pCHi-C
tissue
islet of Langerhans
278
50
58
7
1
6
3
4
1
1
body of pancreas
3
35
4
4
2
2
pancreas
2
9
4
2
1
2
1
1
1
endocrine pancreas
16
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